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BLI And SPR Protocol and FAQs

Learn about BLI And SPR protocol, methods and FAQs

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BLI And SPR Protocol and FAQs

Surface plasmon resonance (SPR) and Bio-Layer Interferometry (BLI) are two commonly used affinity detection techniques. Both techniques can provide real-time unlabeled molecular interaction information, monitor the whole process of molecular binding, and calculate the key data such as intermolecular affinity (KD), binding rate (ka) and dissociation rate (kd). They are suitable for studying the interactions of various small molecule compounds, peptides, proteins, oligonucleotides, phages, viruses and cells.

Surface Plasmon Resonance (SPR) 

Surface plasmon resonance (SPR) is an optical phenomenon. When the substance or the amount of substance on the metal surface changes, the refractive index changes accordingly. The resonance angle of the SPR spectrum to the refractive index of the medium in contact with the metal.

Principle of Surface Plasmon Resonance

SPR affinity biosensors are devices that consist of three main subsystems: sensor hardware (optical reader), biorecognition element, and sample preparation and delivery system. In the optical reader of SPR sensor, the light wave excites the special electromagnetic field mode of surface plasmon (SP). The surface plasma propagates along the thin metal film, and its electric field detects the medium near the metal surface. Any change in the refractive index near the metal surface will lead to a change in the propagation velocity of the surface plasma. This change in propagation can be determined by the optical wave characteristics coupled to the surface plasmon. Biorecognition elements specific to the analyte molecules are immobilized on the metal surface. When the liquid sample is in contact with the sensor surface, the analyte molecules will be captured by the biorecognition molecules. This combination leads to a change in the refractive index near the surface of the sensor, which can be measured by an optical reader. The liquid sample is introduced into the sensor surface through a sample preparation and delivery system. In SPR affinity biosensors, the biomolecular recognition element is immobilized on the solid surface of the SPR sensor reader and captures analyte molecules.
spr
Figure 1. Principle of operation of SPR affinity biosensors. (Reference source: Surface Plasmon Resonance Biosensing.)

Wash

After incubation, unbound proteins and non-specifically bound proteins need to be removed by washing steps. Washing buffers usually contain a certain concentration of salts (such as NaCl) and detergents (such as Triton X-100) to reduce non-specific binding. The washing step is the key to the Pull-down experiment, which determines the specificity and signal-to-noise ratio of the experiment.

Elution

The bound protein complex needs to be released from the solid support by elution buffer. The elution method depends on the characteristics of the label and the solid support:
  • 1 Competitive elution : for example, GST-tagged proteins are eluted with high concentrations of glutathione.
  • 2 Changes in pH or ionic strength : For example, His-tagged proteins are eluted with low pH buffers or high concentrations of imidazole.
  • 3 Cleavage elution : If the tag contains a cleavage site (such as a TEV protease site), the target protein can be released by cleavage.

Detection and Analysis

  • 1 SDS-PAGE : The eluted protein was separated by SDS-PAGE electrophoresis.
  • 2 Western blot : Target proteins or interacting proteins were detected using specific antibodies.
  • 3 Mass spectrometry analysis : If unknown interacting proteins need to be identified, the eluted proteins can be analyzed by mass spectrometry.

The Steps of Surface Plasmon Resonance (SPR)

The ligand is a biomolecule ' immobilized ' on the surface of the chip. The analyte is a molecule ' flowing through ' the surface of the chip in the mobile phase.

Ligand Fixation

Ligand immobilization method

Ligands are directly or indirectly immobilized on the chip surface. 

Direct coupling

The ligand is covalently coupled to the chip surface, commonly used amino coupling method.

capture

The capture molecule is covalently coupled to the chip surface, and the capture molecule is coupled to the ligand by affinity during each cycle. Activate the chip, dilute the ligand in the fixed buffer, and inject the sample channel. The chip was inactivated for some time. 

Analysis

Dilute the analyte with the same analyte buffer. The analyte was injected into the sample channel and dissociated after association. Both the association and dissociation processes are carried out in the analyte buffer. The analyte cycle was repeated according to the analyte concentration. After each interaction analysis cycle, the sensor chip surface was completely regenerated with injection buffer to remove the analyte, and the next concentration cycle of the analyte required repeated injection and regeneration steps.

Biofilm Interferometry (BLI)

Biofilm interferometry (BLI) is a technique to detect the surface reaction of the sensor by detecting the displacement change of the interference spectrum. When a beam of visible light is emitted from the spectrometer, two reflection spectra are formed at the two interfaces of the optical film at the end of the sensor, and an interference spectrum is formed. Any change in film thickness and density due to molecular binding or dissociation can be reflected by the displacement value of the interference spectrum, and a real-time response monitoring map can be made through this displacement value.

the stpes of Biofilm Interferometry (BLI)

Preparation of Reagents and Instruments

To ensure that only specific protein-protein interactions are retained, the captured complex undergoes washing steps. These washes remove any nonspecific binding, ensuring that only the interactions between the bait and its true prey proteins remain. The washing conditions, including buffer composition and strength, are carefully optimized to remove contaminants while preserving the specific interactions.
  • 1 BLI sensor chips (e.g. Ni-NTA, Protein A / G, Streptavidin, etc., selected according to experimental requirements) 
  • 2 Ligand : molecules immobilized on the sensor 
  • 3 Analyte : An interacting molecule to be detected
  • 4 Binding buffers (such as PBS, HBS-EP, etc.) 
  • 5 Elution buffer (remove unconjugated)
  • 6 Regeneration buffer (for sensor regeneration)

Sensor Pretreatment 

The sensor was pre-wetted in an appropriate buffer solution to reduce non-specific binding and improve signal stability. 

Ligand Fixation 

Select the appropriate BLI sensor (e.g., Ni-NTA for His-tagged protein, Protein A / G for antibody). The sensor is immersed in the ligand solution to fix the ligand to the surface of the sensor. Wash to remove unbound ligands to ensure stable binding. 

Analyte Binding 

The sensor is immersed in the analyte solution to be tested to monitor its binding to the ligand. Record the change of optical interference signal (combined phase). 

Dissociation Process

The sensor was moved into the binding buffer to dissociate the analyte from the ligand and monitor the dissociation rate. 

Sensor Regeneration (Optional) 

The regenerated buffer was used to remove the ligand-analyte conjugates, making the sensor reusable. 

Data Analysis

The binding rate (ka), dissociation rate (kd) and affinity (KD) were calculated by the sensor signal curve (binding phase, dissociation phase).
BLI
Figure 2. A Schematic of the equilibration, association, and regeneration steps in each assay cycle. (Reference source: Detection of deoxynivalenol using biolayer interferometry.)
Alpha Lifetech provides SPR affinity assay and BLI affinity assay. Customers can choose the appropriate affinity assay according to their own needs. At the same time, Alpha Lifetech also provides other affinity measurement services, such as competitive ELISA affinity detection services, to help customers better research.

FAQ

  • 1. Common SPR chip types and how to choose them?

  • 2. The non-specific binding of impurities in the sample to the sensor surface affects the signal.

  • 3. Can not get strong enough signal, affect the data analysis.

  • 4. Common BLI chip types and how to choose them?

  • 5. The fixation efficiency of the ligand on the sensor surface is low, resulting in unstable signals.

  • 6. Accurate data such as binding rate (ka) and dissociation rate (kd) cannot be obtained.

reference

[1] Olaru A, Bala C, Jaffrezic-Renault N, Aboul-Enein HY. Surface plasmon resonance (SPR) biosensors in pharmaceutical analysis. Crit Rev Anal Chem. 2015;45(2):97-105. doi:10.1080/10408347.2014.881250
[2] Sun B, Xu J, Liu S, Li QX. Characterization of Small Molecule-Protein Interactions Using SPR Method. Methods Mol Biol. 2023;2690:149-159. doi:10.1007/978-1-0716-3327-4_15
[3] Piliarik M, Vaisocherová H, Homola J. Surface plasmon resonance biosensing. Methods Mol Biol. 2009;503:65-88. doi:10.1007/978-1-60327-567-5_5
[4]Arora P, Sindhu A, Dilbaghi N, Chaudhury A. Biosensors as innovative tools for the detection of food borne pathogens. Biosens Bioelectron. 2011;28(1):1-12. doi:10.1016/j.bios.2011.06.002
[5 ]Sultana, A. and J.E. Lee, Measuring protein-protein and protein-nucleic Acid interactions by biolayer interferometry. Current  Protoctols in Protein Science, 2015. 79: p. 19 25 1-26. 
[6] Petersen, R.L., Strategies Using Bio-Layer Interferometry Biosensor Technology for Vaccine Research and Development. Biosensors (Basel), 2017. 7(4). 
[7] Maragos CM. Detection of deoxynivalenol using biolayer interferometry. Mycotoxin Res. 2011;27(3):157-165. doi:10.1007/s12550-011-0090-y
[8] Auer S, Koho T, Uusi-Kerttula H, et al. Rapid and sensitive detection of norovirusantibodies in human serum with a biolayer interferometry biosensor[J]. Sensors and Actuators B: Chemical. 2015, 221:507-514.
[9] Maragos C M. Detection of deoxynivalenol using biolayer interferometry[J]. MycotoxRes. 2011, 27(3):157-165.